PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00232.1.g00450.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 196aa    MW: 22219.1 Da    PI: 10.9387
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00232.1.g00450.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.9e-1990140155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   ++y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++  +++++g
  Zpz_sc00232.1.g00450.1.am.mk  90 TQYRGIRRRP-WGKWAAEIRDPRK---GVRVWLGTFSTAEEAARAYDVEARRIRG 140
                                   58********.**********954...4**********************99997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.27E-2890150No hitNo description
Gene3DG3DSA:3.30.730.107.1E-3291149IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-2291149IPR016177DNA-binding domain
PfamPF008477.2E-1291140IPR001471AP2/ERF domain
SMARTSM003801.4E-3791154IPR001471AP2/ERF domain
PROSITE profilePS5103224.40891148IPR001471AP2/ERF domain
PRINTSPR003675.9E-1292103IPR001471AP2/ERF domain
PRINTSPR003675.9E-12114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0034059Biological Processresponse to anoxia
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MCGGAILGDL YSRTVTAGDL WADSGSRESG KSRKGKKNSW EFRAGDSSDF EADFDEFQDG  60
DNEEEVDFVY GNQEVLRKSS KFGSRKRKKT QYRGIRRRPW GKWAAEIRDP RKGVRVWLGT  120
FSTAEEAARA YDVEARRIRG IKAKVNFPDT VPASKRRRRP GHVAARAAKK SNSALKQLEH  180
FIMRPVRLVS FLAAMT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2188151266ATERF1
3gcc_A6e-2188151266ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18488RKRKK
28498RKRKKTQYRGIRRRP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00230DAPTransfer from AT1G72360Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463183.19e-59hypothetical protein SORBIDRAFT_02g039300
TrEMBLC5XE219e-59C5XE21_SORBI; Putative uncharacterized protein Sb02g039300
STRINGSb02g039300.13e-58(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145602123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.19e-32ERF family protein